Expert Profile

Kyle Gallivan

Professor

COMP SCI SPONSORED PROJECTS | COLLEGE OF ARTS & SCIENCES

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Research Terms

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Research Projects

Ends

Title

08-2023

Collaborative Research: CIBR: CloudForest: A Portable Cyberinfrastructure Workflow to Advance Biological Insight from Massive, Heterogeneous Phylogenomic Datasets Collaborative Research: CIBR: CloudForest: A Portable Cyberinfrastructure Workflow to Advance Biological Insight from Massive, Heterogeneous Phylogenomic Datasets

05-2017

Collaborative Research: ABI Innovation: Quantifying and Exploiting The Structure of Phylogenetic Tree Space Through Network Analyses Collaborative Research: ABI Innovation: Quantifying and Exploiting The Structure of Phylogenetic Tree Space Through Network Analyses

04-2011

Collaborative Research: Flow-Sensitive Dependence Testin Collaborative Research: Flow-Sensitive Dependence Testin

08-2008

ITR/AP: Collaborative Research on Model Reduction ITR/AP: Collaborative Research on Model Reduction

12-2007

IBM Faculty Partnership IBM Faculty Partnership

08-2006

A Comprehensive Retargetable Embedded Systems Soft A Comprehensive Retargetable Embedded Systems Soft

Publications

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Showing 1 to 25 of 201 publications


Scalable Clustering: Large Scale Unsupervised Learning of Gaussian Mixture Models with Outliers 2024 ▪ Journal of Computational and Graphical Statistics Kyle Gallivan; Yijia Zhou; Adrian Barbu; https://openalex.org/W4403395446 Physical Sciences > Computer Science > Artificial Intelligence
CHAPTER 14 Tree Set Visualization, Exploration, and Applications 2023 ▪ Princeton University Press eBooks Kyle Gallivan; Jeremy M. Brown; James C. Wilgenbusch; Genevieve G. Mount; https://openalex.org/W4320401987 Physical Sciences > Computer Science > Computer Networks and Communications Physical Sciences > Computer Science > Computer Vision and Pattern Recognition Physical Sciences > Environmental Science > Nature and Landscape Conservation
Tree Set Visualization, Exploration, and Applications 2023 ▪ Princeton University Press eBooks Kyle Gallivan; Jeremy M. Brown; James C. Wilgenbusch; Genevieve G. Mount; https://openalex.org/W4324131685 Physical Sciences > Computer Science > Computer Vision and Pattern Recognition Physical Sciences > Environmental Science > Nature and Landscape Conservation
A Limited-Memory Riemannian Symmetric Rank-One Trust-Region Method with a Restart Strategy 2022 ▪ Journal of Scientific Computing Kyle Gallivan; Wen Huang; https://openalex.org/W4293064487 Physical Sciences > Computer Science > Computational Theory and Mathematics Physical Sciences > Mathematics > Numerical Analysis
A drift homotopy implicit particle filter method for nonlinear filtering problems 2021 ▪ Discrete and Continuous Dynamical Systems - S Kyle Gallivan; Xin Li; Feng Bao; https://openalex.org/W3197764304 Physical Sciences > Computer Science > Artificial Intelligence Physical Sciences > Engineering > Electrical and Electronic Engineering Physical Sciences > Engineering > Media Technology
A limited-memory Riemannian symmetric rank-one trust-region method with an efficient algorithm for its subproblem 2021 ▪ IFAC-PapersOnLine Kyle Gallivan; Wen Huang; https://openalex.org/W3185711861 Physical Sciences > Computer Science > Computational Theory and Mathematics Physical Sciences > Mathematics > Numerical Analysis
Analysis of the Neighborhood Pattern Similarity Measure for the Role Extraction Problem 2021 ▪ SIAM Journal on Mathematics of Data Science Kyle Gallivan; Paul Van Dooren; Wen Huang; Melissa Marchand; https://openalex.org/W3167581424 Physical Sciences > Computer Science > Artificial Intelligence Physical Sciences > Mathematics > Geometry and Topology Physical Sciences > Physics and Astronomy > Statistical and Nonlinear Physics
CloudForest: Dockerized Galaxy as a platform for an integrated phylogenomics software workflow 2021 ▪ F1000Research Kyle Gallivan; Jeremy M. Brown; James C. Wilgenbusch; Benjamin S. Toups; Reid Wagner; Zhifeng Deng; https://openalex.org/W3187033946 Social Sciences > Decision Sciences > Information Systems and Management
Community Detection by a Riemannian Projected Proximal Gradient Method 2021 ▪ IFAC-PapersOnLine Kyle Gallivan; Paul Van Dooren; Wen Huang; Meng Wei; https://openalex.org/W3184460759 Life Sciences > Neuroscience > Cognitive Neuroscience Physical Sciences > Physics and Astronomy > Statistical and Nonlinear Physics
Investigating the Genomic Distribution of Phylogenetic Signal with CloudForest 2021 ▪ Practice and Experience in Advanced Research Computing Kyle Gallivan; Jeremy M. Brown; James C. Wilgenbusch; Benjamin S. Toups; Reid Wagner; Zhifeng Deng; https://openalex.org/W3184878582 Life Sciences > Agricultural and Biological Sciences > Plant Science Life Sciences > Biochemistry, Genetics and Molecular Biology > Genetics Life Sciences > Biochemistry, Genetics and Molecular Biology > Molecular Biology
Averaging Symmetric Positive-Definite Matrices 2020 ▪ Springer eBooks Kyle Gallivan; Pierre-Antoine Absil; Wen Huang; Xinru Yuan; https://openalex.org/W3014708875 Physical Sciences > Computer Science > Artificial Intelligence Physical Sciences > Computer Science > Computational Theory and Mathematics Physical Sciences > Engineering > Electrical and Electronic Engineering
CloudForest: An integrated and dynamic phylogenomic toolset for the modern age 2020 ▪ F1000Research Kyle Gallivan; Jeremy M. Brown; James C. Wilgenbusch; Benjamin S. Toups; Thomas McGowan; https://openalex.org/W3082069903 Life Sciences > Biochemistry, Genetics and Molecular Biology > Molecular Biology
Computing the matrix geometric mean: Riemannian versus Euclidean conditioning, implementation techniques, and a Riemannian BFGS method 2020 ▪ Numerical Linear Algebra with Applications Kyle Gallivan; Pierre-Antoine Absil; Wen Huang; Xinru Yuan; https://openalex.org/W3047134914 Physical Sciences > Computer Science > Computational Theory and Mathematics Physical Sciences > Mathematics > Discrete Mathematics and Combinatorics Physical Sciences > Mathematics > Numerical Analysis
Riemannian gradient descent methods for graph-regularized matrix completion 2020 ▪ Linear Algebra and its Applications Kyle Gallivan; P. A. Absil; Shuyu Dong; https://openalex.org/W2994409951 Health Sciences > Medicine > Radiology, Nuclear Medicine and Imaging Physical Sciences > Computer Science > Computer Vision and Pattern Recognition Physical Sciences > Engineering > Computational Mechanics
Simplifying Transformations for a Family of Elastic Metrics on the Space of Surfaces 2020 ▪ 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) Kyle Gallivan; E.Klassen; Martin Bauer; Zhe Su; https://openalex.org/W3037603210 Health Sciences > Medicine > Radiology, Nuclear Medicine and Imaging Physical Sciences > Engineering > Computational Mechanics Physical Sciences > Mathematics > Geometry and Topology
Minimax center to extract a common subspace from multiple datasets. 2019 ▪ The European Symposium on Artificial Neural Networks Kyle Gallivan; Pierre-Antoine Absil; Emilie Renard; https://openalex.org/W3012959533 Life Sciences > Biochemistry, Genetics and Molecular Biology > Molecular Biology Physical Sciences > Computer Science > Artificial Intelligence Physical Sciences > Computer Science > Computer Vision and Pattern Recognition
Preconditioned conjugate gradient algorithms for graph regularized matrix completion. 2019 ▪ The European Symposium on Artificial Neural Networks Kyle Gallivan; Pierre-Antoine Absil; Shuyu Dong; https://openalex.org/W3013332342 Physical Sciences > Computer Science > Artificial Intelligence Physical Sciences > Computer Science > Computational Theory and Mathematics Physical Sciences > Engineering > Computational Mechanics
A Grassmannian Minimum Enclosing Ball Approach for Common Subspace Extraction 2018 ▪ Lecture notes in computer science Kyle Gallivan; P. A. Absil; Emilie Renard; https://openalex.org/W2805642416 Physical Sciences > Computer Science > Computer Vision and Pattern Recognition Physical Sciences > Environmental Science > Environmental Engineering Physical Sciences > Mathematics > Geometry and Topology
A Riemannian BFGS Method Without Differentiated Retraction for Nonconvex Optimization Problems 2018 ▪ SIAM Journal on Optimization Kyle Gallivan; Pierre-Antoine Absil; Wen Huang; https://openalex.org/W2786627029 Physical Sciences > Computer Science > Computational Theory and Mathematics Physical Sciences > Engineering > Computational Mechanics Physical Sciences > Mathematics > Numerical Analysis
Graph learning for regularized low rank matrix completion 2018 Kyle Gallivan; P. A. Absil; Shuyu Dong; https://openalex.org/W2803000360 Physical Sciences > Computer Science > Artificial Intelligence Physical Sciences > Computer Science > Computer Vision and Pattern Recognition Physical Sciences > Engineering > Computational Mechanics
ROPTLIB 2018 ▪ ACM Transactions on Mathematical Software Kyle Gallivan; Pierre-Antoine Absil; Wen Huang; Paul Hand; https://openalex.org/W2886739333 Physical Sciences > Computer Science > Artificial Intelligence Physical Sciences > Engineering > Computational Mechanics
Solving PhaseLift by Low-Rank Riemannian Optimization Methods for Complex Semidefinite Constraints 2017 ▪ SIAM Journal on Scientific Computing Kyle Gallivan; Wen Huang; Xiangxiong Zhang; https://openalex.org/W2757162727 Physical Sciences > Computer Science > Computer Vision and Pattern Recognition Physical Sciences > Engineering > Electrical and Electronic Engineering Physical Sciences > Physics and Astronomy > Radiation
Visualizing phylogenetic tree landscapes 2017 ▪ BMC Bioinformatics Kyle Gallivan; Wen Huang; James C. Wilgenbusch; https://openalex.org/W2585388432 Life Sciences > Biochemistry, Genetics and Molecular Biology > Genetics Life Sciences > Biochemistry, Genetics and Molecular Biology > Molecular Biology Physical Sciences > Earth and Planetary Sciences > Paleontology
A Riemannian BFGS Method for Nonconvex Optimization Problems 2016 ▪ Lecture notes in computational science and engineering Kyle Gallivan; Pierre-Antoine Absil; Wen Huang; https://openalex.org/W2465585463 Physical Sciences > Computer Science > Computational Theory and Mathematics Physical Sciences > Engineering > Computational Mechanics Physical Sciences > Mathematics > Numerical Analysis
A Riemannian Limited-Memory BFGS Algorithm for Computing the Matrix Geometric Mean 2016 ▪ Procedia Computer Science Kyle Gallivan; Pierre-Antoine Absil; Wen Huang; Xinru Yuan; https://openalex.org/W2462905479 Physical Sciences > Computer Science > Computer Vision and Pattern Recognition Physical Sciences > Mathematics > Applied Mathematics Physical Sciences > Mathematics > Geometry and Topology