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some selected one are the following:
cite-key
3B11-N, a monoclonal antibody against MERS-CoV, reduces lung pathology in rhesus monkeys following intratracheal inoculation of MERS-CoV Jordan-n3/2012 (article)
Author
Johnson, Reed F and Bagci, Ulas and Keith, Lauren and Tang, Xianchun and Mollura, Daniel J and Zeitlin, Larry and Qin, Jing and Huzella, Louis and Bartos, Christopher J and Bohorova, Natasha
Journal
Virology
Year
2016
Volume
490
Pages
49--58
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Publisher
Academic Press
Ty
JOUR
cite-key
3D automatic anatomy recognition based on iterative graph-cut-ASM (inproceedings)
Author
Chen, Xinjian and Udupa, Jayaram K and Bagci, Ulas and Alavi, Abass and Torigian, Drew A
Year
2010
Pages
76251T--76251T
Publisher
International Society for Optics and Photonics
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
SPIE Medical Imaging
Ty
CONF
cite-key
3D automatic anatomy segmentation based on graph cut-oriented active appearance models (inproceedings)
Author
Chen, Xinjian and Yao, Jianhua and Zhuge, Ying and Ba?ci, Ula?
Year
2010
Pages
3653--3656
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1424479940
Journal
Image Processing (ICIP), 2010 17th IEEE International Conference on
Ty
CONF
cite-key
3D automatic anatomy segmentation based on iterative graph?cut?ASM (article)
Author
Chen, Xinjian and Bagci, Ulas
Journal
Medical physics
Year
2011
Volume
38
Number
8
Pages
4610--4622
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
2473-4209
Publisher
American Association of Physicists in Medicine
Ty
JOUR
cite-key
18F-FDG and 68Ga-DOTATATE PET/CT in von Hippel-Lindau Disease-Associated Retinal Hemangioblastoma. (article)
Author
Papadakis, Georgios Z and Millo, Corina and Jassel, Inderbir S and Bagci, Ulas and Sadowski, Samira M and Karantanas, Apostolos H and Patronas, Nicholas J
Journal
Clinical Nuclear Medicine
Year
2017
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0363-9762
Publisher
LWW
Ty
JOUR
cite-key
18F-NaF and 18F-FDG PET/CT in Gorham-Stout Disease (article)
Author
Papadakis, Georgios Z and Millo, Corina and Bagci, Ulas and Blau, Jenny and Collins, Michael T
Journal
Clinical Nuclear Medicine
Year
2016
Volume
41
Number
11
Pages
884--885
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0363-9762
Publisher
LWW
Ty
JOUR
cite-key
2007 Index IEEE Signal Processing Letters Vol. 14 (article)
Author
Acero, A and Acton, ST and Adib, A and Affes, S and Akansu, AN and Akcakaya, M and Ala-Kleemola, T and Alku, P and Almhdie, A and Alsusa, E
Journal
IEEE Signal Processing Letters
Year
2007
Volume
14
Number
12
Pages
1059
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
2010 Index IEEE Transactions on Medical Imaging Vol. 29 (article)
Author
Abramyuk, A and Abugharbieh, R and Achten, E and Adler, A and Aguilo, MA and Agurto, C and Ahveninen, J and Ale, A and Alessandrini, M and Alessio, AM
Journal
IEEE Transactions on Medical Imaging
Year
2010
Volume
29
Number
12
Pages
2057
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
2012 Index IEEE Transactions on Biomedical Engineering Vol. 59 (article)
Author
Abuhassan, K and Adeyanju, OO and Adiga, U and Adler, A and Affanni, A and Agarwal, R and Agostini, V and Aguilar, SM and Aguilar-Pelaez, E and Ahmad, S
Journal
IEEE Transactions on Biomedical Engineering
Year
2012
Volume
59
Number
12
Pages
3553
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
2012 Index IEEE Transactions on Image Processing Vol. 21 (article)
Author
Abidi, MA and Abolghasemi, V and Acharya, UR and Aguiar, PMQ and Ahmad, MO and Ahmadi, M and Ahonen, T and Ahuja, N and Akhtarkavan, E and Al-Osaimi, FR
Journal
IEEE Transactions on Image Processing
Year
2012
Volume
21
Number
12
Pages
4881
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
2014 Index IEEE Transactions on Medical Imaging Vol. 33 (article)
Author
Abolmaesumi, P and Abramoff, MD and Acha, B and Acosta, O and Acosta-Cabronero, J and Afsham, N and Afshin, M and Agasthya, GA and Ahmad, M and Ahmed, R
Journal
IEEE Transactions on Medical Imaging
Year
2014
Volume
33
Number
12
Pages
2361
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
A comparison of daubechies and gabor wavelets for classification of mr images (inproceedings)
Author
Bagct, Ulas and Bai, Li
Year
2007
Pages
676--679
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1424412358
Journal
Signal Processing and Communications, 2007. ICSPC 2007. IEEE International Conference on
Ty
CONF
cite-key
A computational pipeline for quantification of pulmonary infections in small animal models using serial PET-CT imaging (article)
Author
Bagci, Ulas and Foster, Brent and Miller-Jaster, Kirsten and Luna, Brian and Dey, Bappaditya and Bishai, William R and Jonsson, Colleen B and Jain, Sanjay and Mollura, Daniel J
Journal
EJNMMI research
Year
2013
Volume
3
Number
1
Pages
55
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
2191-219X
Publisher
Springer Berlin Heidelberg
Ty
JOUR
cite-key
A computational platform for quantification of infectious lung disease using PET-CT imaging (inproceedings)
Author
Bagci, Ulas and Foster, Brent and Xu, Ziyue and Luna, Brian and Dey, Bappaditya and Bishai, William and Jonsson, Colleen and Jain, Sanjay and Mollura, Daniel
Year
2013
Volume
54
Pages
314
Number
Supplement 2
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
Society of Nuclear Medicine Annual Meeting Abstracts
Ty
CONF
cite-key
A Generic Approach to Pathological Lung Segmentation (article)
Author
Mansoor, Awais and Bagci, Ulas and Xu, Ziyue and Foster, Brent and Olivier, Kenneth N and Elinoff, Jason M and Suffredini, Anthony F and Udupa, Jayaram K and Mollura, Daniel J
Journal
Transactions on Medical Imaging
Year
2014
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Publisher
IEEE
Ty
JOUR
cite-key
A graph-theoretic approach for segmentation of PET images (inproceedings)
Author
Ba?ci, Ula? and Yao, Jianhua and Caban, Jesus and Turkbey, Evrim and Aras, Omer and Mollura, Daniel J
Year
2011
Pages
8479--8482
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1457715899
Journal
Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE
Ty
CONF
cite-key
A hybrid method for airway segmentation and automated measurement of bronchial wall thickness on CT (article)
Author
Xu, Ziyue and Bagci, Ulas and Foster, Brent and Mansoor, Awais and Udupa, Jayaram K and Mollura, Daniel J
Journal
Medical image analysis
Year
2015
Volume
24
Number
1
Pages
1--17
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1361-8415
Publisher
Elsevier
Ty
JOUR
cite-key
A hybrid multi-scale approach to automatic airway tree segmentation from CT scans (inproceedings)
Author
Xu, Ziyue and Bagci, Ulas and Foster, Brent and Mollura, Daniel J
Year
2013
Pages
1308--1311
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
146736455X
Journal
Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on
Ty
CONF
cite-key
A new prior shape model for level set segmentation (inproceedings)
Author
Lim, Poay Hoon and Bagci, Ulas and Bai, Li
Year
2011
Pages
125--132
Publisher
Springer Berlin Heidelberg
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
Iberoamerican Congress on Pattern Recognition
Ty
CONF
cite-key
A novel spinal vertebrae segmentation framework combining geometric flow and shape prior with level set method (inproceedings)
Author
Lim, Poay Hoon and Bagci, Ulas and Aras, Omer and Wang, Yan and Bai, Li
Year
2012
Pages
1703--1706
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1457718588
Journal
Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on
Ty
CONF
cite-key
A review on segmentation of positron emission tomography images (article)
Author
Foster, Brent and Bagci, Ulas and Mansoor, Awais and Xu, Ziyue and Mollura, Daniel J
Journal
Computers in biology and medicine
Year
2014
Volume
50
Pages
76--96
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0010-4825
Publisher
Pergamon
Ty
JOUR
cite-key
A Robust Segmentation Framework for Spine Trauma Diagnosis (inbook)
Publisher
Springer International Publishing
Year
2014
Author
Lim, Poay Hoon and Bagci, Ulas and Bai, Li
Pages
25--33
Booktitle
Computational Methods and Clinical Applications for Spine Imaging
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
3319072684
Ty
CHAP
cite-key
Accurate and efficient separation of left and right lungs from 3D CT scans: A generic hysteresis approach (inproceedings)
Author
Xu, Ziyue and Bagci, Ulas and Jonsson, Colleen and Jain, Sanjay and Mollura, Daniel J
Year
2014
Pages
6036--6039
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1424479290
Journal
Engineering in Medicine and Biology Society (EMBC), 2014 36th Annual International Conference of the IEEE
Ty
CONF
cite-key
Accurate and efficient separation of left and right lungs from 3D CT scans: A generic hysteresis approach. (inproceedings)
Author
Ziyue, Xu and Bagci, U and Jonsson, C and Jain, S and Mollura, DJ
Year
2013
Volume
2014
Pages
6036--6039
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1557-170X
Journal
Conference proceedings:... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference
Ty
CONF
cite-key
Accurate quantification of brown adipose tissue through PET-guided CT image segmentation (inproceedings)
Author
Sandouk, Aline and Bagci, Ulas and Xu, Ziyue and Mansoor, Awais and Foster, Brent and Mollura, Daniel
Year
2013
Volume
54
Pages
318
Number
Supplement 2
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
Society of Nuclear Medicine Annual Meeting Abstracts
Ty
CONF
cite-key
Affinity propagation clustering determines distributed uptake regions in PET images: A computer-aided approach for quantification of pulmonary infections in small animals (article)
Author
Foster, Brent and Bagci, Ulas and Xu, Ziyue and Dey, Bappaditya and Luna, Brian and Bishai, William and Jain, Sanjay and Mollura, Daniel
Journal
Journal of Nuclear Medicine
Year
2013
Volume
54
Number
supplement 2
Pages
313--313
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0161-5505
Publisher
Society of Nuclear Medicine
Ty
JOUR
cite-key
An automatic method for renal cortex segmentation on CT images: evaluation on kidney donors (article)
Author
Chen, Xinjian and Summers, Ronald M and Cho, Monique and Bagci, Ulas and Yao, Jianhua
Journal
Academic radiology
Year
2012
Volume
19
Number
5
Pages
562--570
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1076-6332
Publisher
Elsevier
Ty
JOUR
cite-key
Application of 68Ga-DOTA-TATE PET/CT in metastatic neuroendocrine tumor of gastrointestinal origin (article)
Author
Papadakis, Georgios Z and Sadowski, Samira M and Bagci, Ulas and Millo, Corina
Journal
Annals of Gastroenterology
Year
2016
Volume
30
Number
1
Pages
130
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1792-7463
Ty
JOUR
cite-key
Atlas-based rib-bone detection in chest X-rays (article)
Author
Candemir, Sema and Jaeger, Stefan and Antani, Sameer and Bagci, Ulas and Folio, Les R and Xu, Ziyue and Thoma, George
Journal
Computerized Medical Imaging and Graphics
Year
2016
Volume
51
Pages
32--39
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0895-6111
Publisher
Pergamon
Ty
JOUR
cite-key
Automated computer quantification of breast cancer in small-animal models using PET-guided MR image co-segmentation (article)
Author
Bagci, Ulas and Kramer-Marek, Gabriela and Mollura, Daniel J
Journal
EJNMMI research
Year
2013
Volume
3
Number
1
Pages
49
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
2191-219X
Publisher
Springer Berlin Heidelberg
Ty
JOUR
cite-key
Automatic anatomy recognition and registration (article)
Author
Bagci, Ulas
Year
2010
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Publisher
University of Nottingham
Ty
DISS
cite-key
Automatic best reference slice selection for smooth volume reconstruction of a mouse brain from histological images (article)
Author
Bagci, Ula? and Bai, Li
Journal
IEEE Transactions on Medical imaging
Year
2010
Volume
29
Number
9
Pages
1688--1696
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0278-0062
Publisher
IEEE
Ty
JOUR
cite-key
Automatic classification of musical genres using inter-genre similarity (article)
Author
Bagci, Ulas and Erzin, Engin
Journal
Signal Processing Letters, IEEE
Year
2007
Volume
14
Number
8
Pages
521--524
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Publisher
IEEE
Ty
JOUR
cite-key
Automatic detection and quantification of tree-in-bud (TIB) opacities from CT scans (article)
Author
Bagci, Ulas and Yao, Jianhua and Wu, Albert and Caban, Jesus and Palmore, Tara N and Suffredini, Anthony F and Aras, Omer and Mollura, Daniel J
Journal
IEEE Transactions on Biomedical Engineering
Year
2012
Volume
59
Number
6
Pages
1620--1632
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0018-9294
Publisher
IEEE
Ty
JOUR
cite-key
Automatic detection of tree-in-bud patterns for computer assisted diagnosis of respiratory tract infections (inproceedings)
Author
Ba?ci, Ula? and Yao, Jianhua and Caban, Jesus and Palmore, Tara N and Suffredini, Anthony F and Mollura, Daniel J
Year
2011
Pages
5096--5099
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1457715899
Journal
Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE
Ty
CONF
cite-key
Automatic quantification of tree-in-bud patterns from CT scans (inproceedings)
Author
Bagci, Ulas and Miller-Jaster, Kirsten and Yao, Jianhua and Wu, Albert and Caban, Jesus and Olivier, Kenneth N and Aras, Omer and Mollura, Daniel J
Year
2012
Pages
1459--1462
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1457718588
Journal
Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on
Ty
CONF
cite-key
Automatic Segmentation and Quantification of White and Brown Adipose Tissues from PET/CT Scans (article)
Author
Hussein, Sarfaraz and Green, Aileen and Watane, Arjun and Reiter, David and Chen, Xinjian and Papadakis, Georgios Z and Wood, Bradford and Cypess, Aaron and Osman, Medhat and Bagci, Ulas
Journal
IEEE Transactions on Medical Imaging
Year
2016
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0278-0062
Publisher
IEEE
Ty
JOUR
cite-key
Avascular Necrosis of the Hips With Increased Activity on 68Ga-DOTATATE PET/CT. (article)
Author
Papadakis, Georgios Z and Millo, Corina and Karantanas, Apostolos H and Bagci, Ulas and Patronas, Nicholas J
Journal
Clinical Nuclear Medicine
Year
2017
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0363-9762
Publisher
LWW
Ty
JOUR
cite-key
Ball-scale based hierarchical multi-object recognition in 3D medical images (inproceedings)
Author
Ba?ci, Ulas and Udupa, Jayaram K and Chen, Xinjian
Year
2010
Pages
762345--762345
Publisher
International Society for Optics and Photonics
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
SPIE Medical Imaging
Ty
CONF
cite-key
Ball-scale based multi-object recognition in a hierarchical framework (inproceedings)
Author
Bagci, U and Udupa, JK and Chen, X
Year
2010
Volume
7623
Pages
7623451--76234512
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
Proc. of SPIE Medical Imaging
Ty
CONF
cite-key
BOOSTING CLASSIFIERS FOR AUTOMATIC MUSIC GENRE CLASSIFICATION (article)
Author
Bagc?, Ulas
Year
2005
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Publisher
KoçUniversity
Ty
DISS
cite-key
Boosting classifiers for music genre classification (article)
Author
Ba?c?, Ula? and Erzin, Engin
Journal
Computer and Information Sciences-Iscis 2005
Year
2005
Pages
575--584
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Publisher
Springer Berlin/Heidelberg
Ty
JOUR
cite-key
Breast Fibroadenoma With Increased Activity on 68Ga DOTATATE PET/CT (article)
Author
Papadakis, Georgios Z and Millo, Corina and Sadowski, Samira M and Karantanas, Apostolos H and Bagci, Ulas and Patronas, Nicholas J
Journal
Clinical Nuclear Medicine
Year
2017
Volume
42
Number
2
Pages
145--146
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0363-9762
Publisher
LWW
Ty
JOUR
cite-key
Brown adipose tissue detected by FDG PET/CT is associated with less central abdominal visceral fat (article)
Author
Green, Aileen and Bagci, Ulas and Kelly, Patrick and Osman, Medhat
Journal
Journal of Nuclear Medicine
Year
2015
Volume
56
Number
supplement 3
Pages
1416--1416
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0161-5505
Publisher
Society of Nuclear Medicine
Ty
JOUR
cite-key
Brown adipose tissue may be associated with a lower ratio of abdominal obesity to whole body obesity compared to body mass index matched controls (article)
Author
Green, Aileen and Bagci, Ulas and Kelly, Patrick and Osman, Medhat
Journal
Journal of Nuclear Medicine
Year
2015
Volume
56
Number
supplement 3
Pages
1654--1654
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0161-5505
Publisher
Society of Nuclear Medicine
Ty
JOUR
cite-key
Characterization of Lung Nodule Malignancy Using Hybrid Shape and Appearance Features (inproceedings)
Author
Buty, Mario and Xu, Ziyue and Gao, Mingchen and Bagci, Ulas and Wu, Aaron and Mollura, Daniel J
Year
2016
Pages
662--670
Publisher
Springer International Publishing
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
International Conference on Medical Image Computing and Computer-Assisted Intervention
Ty
CONF
cite-key
Characterizing non-linear dependencies among pairs of clinical variables and imaging data (inproceedings)
Author
Caban, Jesus J and Bagci, Ulas and Mehari, Alem and Alam, Shoaib and Fontana, Joseph R and Kato, Gregory J and Mollura, Daniel J
Year
2012
Pages
2700--2703
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1457717875
Journal
Engineering in Medicine and Biology Society (EMBC), 2012 Annual International Conference of the IEEE
Ty
CONF
cite-key
CIDI-lung-seg: A single-click annotation tool for automatic delineation of lungs from CT scans (inproceedings)
Author
Mansoor, Awais and Bagci, Ulas and Foster, Brent and Xu, Ziyue and Douglas, Deborah and Solomon, Jeffrey M and Udupa, Jayaram K and Mollura, Daniel J
Year
2014
Pages
1087--1090
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1424479290
Journal
Engineering in Medicine and Biology Society (EMBC), 2014 36th Annual International Conference of the IEEE
Ty
CONF
cite-key
Computer-aided detection and quantification of cavitary tuberculosis from CT scans (article)
Author
Xu, Ziyue and Bagci, Ulas and Kubler, Andre and Luna, Brian and Jain, Sanjay and Bishai, William R and Mollura, Daniel J
Journal
Medical Physics
Year
2013
Volume
40
Pages
113701
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Publisher
AIP
Ty
JOUR
cite-key
Computer-Aided Detection (CADx) for Plastic Deformation Fractures in Pediatric Forearm (article)
Author
Zhou, Yuwei and Teomete, Uygar and Dandin, Ozgur and Osman, Onur and Dandinoglu, Taner and Bagci, Ulas and Zhao, Weizhao
Journal
Computers in Biology and Medicine
Year
2016
Volume
78
Pages
120--125
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0010-4825
Publisher
Pergamon
Ty
JOUR
cite-key
Computer?aided pulmonary image analysis in small animal models (article)
Author
Xu, Ziyue and Bagci, Ulas and Mansoor, Awais and Kramer?Marek, Gabriela and Luna, Brian and Kubler, Andre and Dey, Bappaditya and Foster, Brent and Papadakis, Georgios Z and Camp, Jeremy V
Journal
Medical physics
Year
2015
Volume
42
Number
7
Pages
3896--3910
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
2473-4209
Publisher
American Association of Physicists in Medicine
Ty
JOUR
cite-key
Computer-assisted detection of infectious lung diseases: A review”{$[$}Comput. Med. Imag. Graph. 36 (2012) 72–84{$]$} (article)
Author
Bagci, Ulas and Bray, Mike and Caban, Jesus and Yao, Jianhua and Mollura, Daniel J
Journal
Computerized Medical Imaging and Graphics
Year
2012
Volume
36
Number
2
Pages
169
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Context Driven Label Fusion for segmentation of Subcutaneous and Visceral Fat in CT Volumes (article)
Author
Hussein, Sarfaraz and Green, Aileen and Watane, Arjun and Papadakis, Georgios and Osman, Medhat and Bagci, Ulas
Journal
arXiv preprint arXiv:1512.04958
Year
2015
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Correction to “A Generic Approach to Pathological Lung Segmentation”{$[$}Dec 14 2293-2310{$]$} (article)
Author
Mansoor, Awais and Bagci, Ulas and Xu, Ziyue and Foster, Brent and Olivier, Kenneth N and Elinoff, Jason M and Suffredini, Anthony F and Udupa, Jayaram K and Mollura, Daniel J
Journal
IEEE transactions on medical imaging
Year
2015
Volume
34
Number
1
Pages
354--354
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0278-0062
Publisher
IEEE
Ty
JOUR
cite-key
Correlation of anatomical and functional information from PET-CT images (article)
Author
Bagci, Ulas and Aras, Omer and Mollura, Daniel
Journal
Journal of Nuclear Medicine
Year
2012
Volume
53
Number
supplement 1
Pages
2266--2266
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0161-5505
Publisher
Society of Nuclear Medicine
Ty
JOUR
cite-key
Corrigendum to “Computer-assisted detection of infectious lung diseases: A review”{$[$}Comput. Med. Imag. Graph. 36 (2012) 72–84{$]$} (article)
Author
Ba?c?, Ula? and Bray, Mike and Caban, Jesus and Yao, Jianhua and Mollura, Daniel J
Journal
Computerized Medical Imaging and Graphics
Year
2012
Volume
36
Number
2
Pages
169
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0895-6111
Publisher
Pergamon
Ty
JOUR
cite-key
Co-segmentation of functional and anatomical images (inproceedings)
Author
Bagci, Ulas and Udupa, Jayaram K and Yao, Jianhua and Mollura, Daniel J
Year
2012
Pages
459--467
Publisher
Springer Berlin Heidelberg
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
International Conference on Medical Image Computing and Computer-Assisted Intervention
Ty
CONF
cite-key
Deep Learning in Radiology: Recent Advances, Challenges and Future Trends (article)
Author
Hussein, Sarfaraz and Raviprakash, Harish and Teomete?, Uygar and Bagci, Ulas
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Denoising PET images using singular value thresholding and stein’s unbiased risk estimate (inproceedings)
Author
Bagci, Ulas and Mollura, Daniel J
Year
2013
Pages
115--122
Publisher
Springer Berlin Heidelberg
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
International Conference on Medical Image Computing and Computer-Assisted Intervention
Ty
CONF
cite-key
Detecting alzheimer disease in magnetic resonance brain images using gabor wavelets (inproceedings)
Author
Bagci, Ulas and Bai, Li
Year
2007
Pages
1--4
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1424407192
Journal
Signal Processing and Communications Applications, 2007. SIU 2007. IEEE 15th
Ty
CONF
cite-key
Detection and Quantification of Brown Fat Tissue using PET-CT Scans: A Novel Computer Aided Detection System (inproceedings)
Author
Papadakis, GZ and Bagci, U and Xu, Z and Kissell, KA and Stratakis, CA and Mollura, DJ
Year
2014
Volume
41
Pages
S187--S188
Publisher
SPRINGER 233 SPRING ST, NEW YORK, NY 10013 USA
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1619-7070
Journal
EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING
Ty
CONF
cite-key
Determination of onset of failure of rocks in multiple failure state triaxial tests using scale-based differential geometry (article)
Author
Bagci, Ulas and Mamurekli, Deniz
Journal
Archives of Mining Sciences
Year
2009
Volume
54
Number
1
Pages
55--78
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Diffusion based enhancement of PET images for improved diagnostic measurements in clinical nuclear medicine (inproceedings)
Author
Xu, Ziyue and Bagci, Ulas and Mollura, Daniel
Year
2014
Volume
55
Pages
2051
Number
Supplement 1
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
Society of Nuclear Medicine Annual Meeting Abstracts
Ty
CONF
cite-key
Distinguished Reviewers 2013 (article)
Author
Lambrou, Tryphon and Toussy, Jafar Alavy and Zhou, Fengfeng and Acharya, U Rajendra and Ellmore, Timothy and Coppini, Giuseppe and Gertych, Arkadiusz and Marceglia, Sara and Ye, Harold and Paglialonga, Alessia
Journal
Computers in Biology and Medicine
Year
2013
Volume
43
Pages
A1
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Distinguished Reviewers 2014 (article)
Author
Lambrou, Tryphon and Zhou, Fengfen and Ye, Harold and Su, Gang and Gertych, Arkadiusz and Acharya, U Rajendra and Liu, Liang and Cai, Rongman and Othman, Razib M and Janjarasjitt, Suparerk
Journal
Computers in Biology and Medicine
Year
2015
Volume
56
Pages
A1
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Dr. Rahul Sukthankar (article)
Author
Bagci, Ulas
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Ectopic ACTH and CRH co-secreting tumor localized by 68Ga-DOTA-TATE PET/CT (article)
Author
Papadakis, Georgios Z and Bagci, Ulas and Sadowski, Samira M and Patronas, Nicholas J and Stratakis, Constantine A
Journal
Clinical nuclear medicine
Year
2015
Volume
40
Number
7
Pages
576--578
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0363-9762
Publisher
LWW
Ty
JOUR
cite-key
Efficient ribcage segmentation from CT scans using shape features (inproceedings)
Author
Xu, Ziyue and Bagci, Ulas and Jonsson, Colleen and Jain, Sanjay and Mollura, Daniel J
Year
2014
Pages
2899--2902
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1424479290
Journal
Engineering in Medicine and Biology Society (EMBC), 2014 36th Annual International Conference of the IEEE
Ty
CONF
cite-key
Endolymphatic Sac Tumor Showing Increased Activity on 68Ga DOTATATE PET/CT (article)
Author
Papadakis, Georgios Z and Millo, Corina and Sadowski, Samira M and Bagci, Ulas and Patronas, Nicholas J
Journal
Clinical Nuclear Medicine
Year
2016
Volume
41
Number
10
Pages
783--784
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0363-9762
Publisher
LWW
Ty
JOUR
cite-key
Epididymal Cystadenomas in von Hippel-Lindau Disease Showing Increased Activity on 68Ga DOTATATE PET/CT (article)
Author
Papadakis, Georgios Z and Millo, Corina and Sadowski, Samira M and Bagci, Ulas and Patronas, Nicholas J
Journal
Clinical Nuclear Medicine
Year
2016
Volume
41
Number
10
Pages
781--782
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0363-9762
Publisher
LWW
Ty
JOUR
cite-key
Evaluation of candidate vaccine approaches for MERS-CoV (article)
Author
Wang, Lingshu and Shi, Wei and Joyce, M Gordon and Modjarrad, Kayvon and Zhang, Yi and Leung, Kwanyee and Lees, Christopher R and Zhou, Tongqing and Yassine, Hadi M and Kanekiyo, Masaru
Journal
Nature communications
Year
2015
Volume
6
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Publisher
Nature Research
Ty
JOUR
cite-key
Fibrous Dysplasia Mimicking Malignancy on 68Ga-DOTATATE PET/CT. (article)
Author
Papadakis, Georgios Z and Millo, Corina and Sadowski, Samira M and Karantanas, Apostolos H and Bagci, Ulas and Patronas, Nicholas J
Journal
Clinical Nuclear Medicine
Year
2017
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0363-9762
Publisher
LWW
Ty
JOUR
cite-key
Fully automatic 3D reconstruction of histological images (inproceedings)
Author
Bagci, Ulas and Bai, Li
Year
2008
Pages
991--994
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1424420024
Journal
Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on
Ty
CONF
cite-key
Fuzzy Connectedness Image Co-segmentation for HybridPET/MRI and PET/CT Scans (inbook)
Publisher
Springer International Publishing
Year
2015
Author
Xu, Ziyue and Bagci, Ulas and Udupa, Jayaram K and Mollura, Daniel J
Pages
15--24
Booktitle
Computational Methods for Molecular Imaging
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
331918430X
Ty
CHAP
cite-key
Gaze2Segment: A Pilot Study for Integrating Eye-Tracking Technology into Medical Image Segmentation (article)
Author
Khosravan, Naji and Celik, Haydar and Turkbey, Baris and Cheng, Ruida and McCreedy, Evan and McAuliffe, Matthew and Bednarova, Sandra and Jones, Elizabeth and Chen, Xinjian and Choyke, Peter L
Journal
arXiv preprint arXiv:1608.03235
Year
2016
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Hierarchical scale-based multiobject recognition of 3-D anatomical structures (article)
Author
Bagci, Ulas and Chen, Xinjian and Udupa, Jayaram K
Journal
IEEE Transactions on Medical Imaging
Year
2012
Volume
31
Number
3
Pages
777--789
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0278-0062
Publisher
IEEE
Ty
JOUR
cite-key
Highly precise partial volume correction for PET images: An iterative approach via shape consistency (inproceedings)
Author
Xu, Ziyue and Bagci, Ulas and Gao, Mingchen and Mollura, Daniel J
Year
2015
Pages
1196--1199
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1479923745
Journal
Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on
Ty
CONF
cite-key
Holistic Classification of CT Attenuation Patterns for Interstitial Lung Diseases via Deep Convolutional Neural Networks (article)
Author
Gao, Mingchen and Bagci, Ulas and Lu, Le and Wu, Aaron and Buty, Mario and Shin, Hoo-Chang and Roth, Holger and Papadakis, Georgios Z and Depeursinge, Adrien and Summers, Ronald M
Year
2015
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Identification of spinal vertebrae using mathematical morphology and level set method (inproceedings)
Author
Lim, Poay Hoon and Bagci, Ulas and Aras, Omer and Bai, Li
Year
2011
Pages
3105--3107
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1467301183
Journal
Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2011 IEEE
Ty
CONF
cite-key
Improved PET image quantification via iterative denoising and partial volume correction (article)
Author
Xu, Ziyue and Bagci, Ulas and Gao, Mingchen and Mollura, Daniel
Journal
Journal of Nuclear Medicine
Year
2015
Volume
56
Number
supplement 3
Pages
1744--1744
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0161-5505
Publisher
Society of Nuclear Medicine
Ty
JOUR
cite-key
In vivo prediction of tuberculosis cavity formation in rabbits (article)
Author
Luna, Brian and Kubler, André and Larsson, Christer and Foster, Brent and Bagci, Ulas and Mollura, Daniel J and Jain, Sanjay and Bishai, William R
Journal
Journal of Infectious Diseases
Year
2014
Pages
jiu449
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0022-1899
Publisher
Oxford University Press
Ty
JOUR
cite-key
Intensity non-standardness affects computer recognition of anatomical structures (inproceedings)
Author
Bagci, Ulas and Udupa, Jayaram K and Chen, Xinjian
Year
2011
Pages
79642M--79642M
Publisher
International Society for Optics and Photonics
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
SPIE Medical Imaging
Ty
CONF
cite-key
Inter genre similarity modelling for automatic music genre classification (article)
Author
Bagci, Ulas and Erzin, Engin
Journal
arXiv preprint arXiv:0907.3220
Year
2009
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Introducing Willmore Flow Into Level Set Segmentation of Spinal Vertebrae (article)
Author
Lim, P and Bagci, Ulas and Bai, Li
Journal
IEEE Transactions on Biomedical Engineering
Year
2013
Volume
60
Number
1
Pages
115--122
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Joint segmentation of anatomical and functional images: Applications in quantification of lesions from PET, PET-CT, MRI-PET, and MRI-PET-CT images (article)
Author
Bagci, Ulas and Udupa, Jayaram K and Mendhiratta, Neil and Foster, Brent and Xu, Ziyue and Yao, Jianhua and Chen, Xinjian and Mollura, Daniel J
Journal
Medical image analysis
Year
2013
Volume
17
Number
8
Pages
929--945
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1361-8415
Publisher
Elsevier
Ty
JOUR
cite-key
Kidney Tumor in a von Hippel-Lindau (VHL) Patient With Intensely Increased Activity on 68Ga-DOTA-TATE PET/CT (article)
Author
Papadakis, Georgios Z and Millo, Corina and Sadowski, Samira M and Bagci, Ulas and Patronas, Nicholas J
Journal
Clinical Nuclear Medicine
Year
2016
Volume
41
Number
12
Pages
970--971
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0363-9762
Publisher
LWW
Ty
JOUR
cite-key
Learning shape and texture characteristics of CT tree-in-bud opacities for CAD systems (inproceedings)
Author
Bagci, Ulas and Yao, Jianhua and Caban, Jesus and Suffredini, Anthony F and Palmore, Tara N and Mollura, Daniel J
Year
2011
Pages
215--222
Publisher
Springer Berlin Heidelberg
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
International Conference on Medical Image Computing and Computer-Assisted Intervention
Ty
CONF
cite-key
Lower respiratory tract infection of the Ferret by 2009 H1N1 pandemic influenza A virus triggers biphasic, systemic, and local recruitment of neutrophils (article)
Author
Camp, Jeremy V and Bagci, Ulas and Chu, Yong-Kyu and Squier, Brendan and Fraig, Mostafa and Uriarte, Silvia M and Guo, Haixun and Mollura, Daniel J and Jonsson, Colleen B
Journal
Journal of virology
Year
2015
Volume
89
Number
17
Pages
8733--8748
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0022-538X
Publisher
American Society for Microbiology
Ty
JOUR
cite-key
Manyetik Rezonans Beyin Imgelerinden Alzheimer Hastal?g?tan?s?nda Gabor Dalgac?klar?Kullan?m?Detecting Alzheimer Disease in Magnetic Resonance Brain Images Using Gabor Wavelets (article)
Author
Bagc?, Ulas and Bai, Li
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Medical image segmentation by combining graph cuts and oriented active appearance models (article)
Author
Chen, Xinjian and Udupa, Jayaram K and Bagci, Ulas and Zhuge, Ying and Yao, Jianhua
Journal
IEEE Transactions on Image Processing
Year
2012
Volume
21
Number
4
Pages
2035--2046
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1057-7149
Publisher
IEEE
Ty
JOUR
cite-key
Monitoring pulmonary fibrosis by fusing clinical, physiological, and computed tomography features (inproceedings)
Author
Caban, Jesus J and Yao, Jianhua and Bagci, Ulas and Mollura, Daniel J
Year
2011
Pages
6216--6219
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1457715899
Journal
Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE
Ty
CONF
cite-key
Multiple Organ detection in CT Volumes Using Random Forests (article)
Author
Donenfeld, Daniel and Hussein, Sarfaraz and Bagci, Ulas and Shah, Mubarak
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Multiresolution elastic medical image registration in standard intensity scale (inproceedings)
Author
Bagci, Ulas and Bai, Li
Year
2007
Pages
305--312
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0769529968
Journal
Computer Graphics and Image Processing, 2007. SIBGRAPI 2007. XX Brazilian Symposium on
Ty
CONF
cite-key
Mycobacterium tuberculosis dysregulates MMP/TIMP balance to drive rapid cavitation and unrestrained bacterial proliferation (article)
Author
Kübler, André and Luna, Brian and Larsson, Christer and Ammerman, Nicole C and Andrade, Bruno B and Orandle, Marlene and Bock, Kevin W and Xu, Ziyue and Bagci, Ulas and Molura, Daniel J
Journal
The Journal of pathology
Year
2015
Volume
235
Number
3
Pages
431--444
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1096-9896
Publisher
John Wiley \& Sons, Ltd
Ty
JOUR
cite-key
Near-optimal keypoint sampling for fast pathological lung segmentation (inproceedings)
Author
Mansoor, Awais and Bagci, Ulas and Mollura, Daniel J
Year
2014
Pages
6032--6035
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1424479290
Journal
Engineering in Medicine and Biology Society (EMBC), 2014 36th Annual International Conference of the IEEE
Ty
CONF
cite-key
Noise adaptive multi-resolution technique to accurately denoise pet, mri-pet, and pet-ct images (article)
Author
Mansoor, Awais and Bagci, Ulas and Mollura, Daniel
Journal
Journal of Nuclear Medicine
Year
2014
Volume
55
Number
supplement 1
Pages
2050--2050
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0161-5505
Publisher
Society of Nuclear Medicine
Ty
JOUR
cite-key
Nuclear Medicine Meets Computer Vision: Increasing Role of Computerized Detection, Tracking, Diagnosis, and Quantification of PET/CT and PET/MRI Studies (article)
Author
Bagci, Ulas and PAPADAKIS, GEORGIOS and Xu, Ziyue and Green, Aileen and Osman, Medhat and Shah, Mubarak
Journal
Journal of Nuclear Medicine
Year
2015
Volume
56
Number
supplement 3
Pages
1922--1922
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0161-5505
Publisher
Society of Nuclear Medicine
Ty
JOUR
cite-key
Optimally stabilized PET image denoising using trilateral filtering (inproceedings)
Author
Mansoor, Awais and Bagci, Ulas and Mollura, Daniel J
Year
2014
Pages
130--137
Publisher
Springer International Publishing
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
International Conference on Medical Image Computing and Computer-Assisted Intervention
Ty
CONF
cite-key
Orientation estimation of anatomical structures in medical images for object recognition (inproceedings)
Author
Ba?ci, Ula? and Udupa, Jayaram K and Chen, Xinjian
Year
2011
Pages
79622L--79622L
Publisher
International Society for Optics and Photonics
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
SPIE Medical Imaging
Ty
CONF
cite-key
Parallel AdaBoost algorithm for Gabor wavelet selection in face recognition (inproceedings)
Author
Bagci, Ulas and Bai, Li
Year
2008
Pages
1640--1643
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1424417651
Journal
Image Processing, 2008. ICIP 2008. 15th IEEE International Conference on
Ty
CONF
cite-key
PET of HER2-positive pulmonary metastases with 18F-ZHER2: 342 affibody in a murine model of breast cancer: comparison with 18F-FDG (article)
Author
Kramer-Marek, Gabriela and Bernardo, Marcelino and Kiesewetter, Dale O and Bagci, Ulas and Kuban, Monika and Omer, Aras and Zielinski, Rafal and Seidel, Jurgen and Choyke, Peter and Capala, Jacek
Journal
Journal of Nuclear Medicine
Year
2012
Volume
53
Number
6
Pages
939--946
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0161-5505
Publisher
Society of Nuclear Medicine
Ty
JOUR
cite-key
Predicting future morphological changes of lesions from radiotracer uptake in 18F-FDG-PET images (article)
Author
Bagci, Ulas and Yao, Jianhua and Miller-Jaster, Kirsten and Chen, Xinjian and Mollura, Daniel J
Journal
PLoS One
Year
2013
Volume
8
Number
2
Pages
e57105
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1932-6203
Publisher
Public Library of Science
Ty
JOUR
cite-key
QAV-PET: A Free Software for Quantitative Analysis and Visualization of PET Images (article)
Author
Foster, Brent and Bagci, Ulas and Mollura, Daniel J
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
QAV-PET: Quantitative Analysis and Visualization of PET Images (inproceedings)
Author
Foster, Brent and Bagci, Ulas and Papadakis, Georgios Z and Mollura, Daniel J
Year
2013
Volume
2014
Pages
1909--1912
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1557-170X
Journal
Conference proceedings:... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference
Ty
CONF
cite-key
Recent advances in PET, PET-CT, and MRI-PET image segmentation techniques (inproceedings)
Author
Bagci, Ulas and Xu, Ziyue and Mollura, Daniel
Year
2014
Volume
55
Pages
1280
Number
Supplement 1
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
Society of Nuclear Medicine Annual Meeting Abstracts
Ty
CONF
cite-key
Recombinant human factor VIIa for alveolar hemorrhage following allogeneic stem cell transplantation (article)
Author
Elinoff, Jason M and Bagci, Ulas and Moriyama, Brad and Dreiling, Jennifer L and Foster, Brent and Gormley, Nicole J and Salit, Rachel B and Cai, Rongman and Sun, Junfeng and Beri, Andrea
Journal
Biology of Blood and Marrow Transplantation
Year
2014
Volume
20
Number
7
Pages
969--978
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1083-8791
Publisher
Elsevier
Ty
JOUR
cite-key
Registration of standardized histological images in feature space (article)
Author
Bagci, Ulas and Bai, Li
Journal
Arxiv preprint arXiv:0907.3209
Year
2009
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Registration of standardized histological images in feature space (inproceedings)
Author
Ba?ci, Ula? and Bai, Li
Year
2008
Pages
69142V--69142V
Publisher
International Society for Optics and Photonics
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
Medical Imaging
Ty
CONF
cite-key
Robust and fully automated segmentation of mandible from CT scans (article)
Author
Torosdagli, Neslisah and Liberton, Denise K and Verma, Payal and Lee, Murat Sincan Janice and Pattanaik, Sumanta and Bagci, Ulas
Journal
arXiv preprint arXiv:1702.07059
Year
2017
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Robust segmentation and accurate target definition for positron emission tomography images using affinity propagation (inproceedings)
Author
Foster, Brent and Bagci, Ulas and Luna, Brian and Dey, Bappaditya and Bishai, William and Jain, Sanjay and Xu, Ziyue and Mollura, Daniel J
Year
2013
Pages
1461--1464
Publisher
IEEE
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
146736455X
Journal
Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on
Ty
CONF
cite-key
Schmorl Nodes Can Cause Increased 68Ga DOTATATE Activity on PET/CT, Mimicking Metastasis in Patients With Neuroendocrine Malignancy (article)
Author
Papadakis, Georgios Z and Millo, Corina and Bagci, Ulas and Sadowski, Samira M and Stratakis, Constantine A
Journal
Clinical nuclear medicine
Year
2016
Volume
41
Number
3
Pages
249--250
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0363-9762
Publisher
LWW
Ty
JOUR
cite-key
Segmentation and image analysis of abnormal lungs at CT: current approaches, challenges, and future trends (article)
Author
Mansoor, Awais and Bagci, Ulas and Foster, Brent and Xu, Ziyue and Papadakis, Georgios Z and Folio, Les R and Udupa, Jayaram K and Mollura, Daniel J
Journal
RadioGraphics
Year
2015
Volume
35
Number
4
Pages
1056--1076
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0271-5333
Publisher
Radiological Society of North America
Ty
JOUR
cite-key
Segmentation based denoising of PET images: An iterative approach via regional means and affinity propagation (inproceedings)
Author
Xu, Ziyue and Bagci, Ulas and Seidel, Jurgen and Thomasson, David and Solomon, Jeff and Mollura, Daniel J
Year
2014
Pages
698--705
Publisher
Springer International Publishing
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
International Conference on Medical Image Computing and Computer-Assisted Intervention
Ty
CONF
cite-key
Segmentation of PET Images for Computer-Aided Functional Quantification of Tuberculosis in Small Animal Models (article)
Author
Foster, Brent and Bagci, Ulas and Xu, Ziyue and Dey, Bappaditya and Luna, Brian and Bishai, William and Jain, Sanjay and Mollura, Daniel J
Journal
Transactions on Biomedical Engineering
Year
2014
Volume
61
Number
3
Pages
711--724
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Publisher
IEEE
Ty
JOUR
cite-key
Serum IGF-1, IGFBP-3 levels and circulating tumor cells (CTCs) in early breast cancer patients (article)
Author
Papadakis, Georgios Z and Mavroudis, Dimitrios and Georgoulias, Vasilios and Souglakos, John and Alegakis, Athanasios K and Samonis, George and Bagci, Ulas and Makrigiannakis, Antonis and Zoras, Odysseas
Journal
Growth Hormone \& IGF Research
Year
2017
Volume
33
Pages
28--34
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1096-6374
Publisher
Churchill Livingstone
Ty
JOUR
cite-key
Single-channel Sparse Nonnegative Blind Source Separation Method for Automatic 3D Delineation of Lung Tumor in PET Images (article)
Author
Kopriva, Ivica and Ju, Wei and Zhang, Bin and Shi, Fei and Xiang, Dehui and Yu, Kai and Wang, Ximing and Bagci, Ulas and Chen, Xinjian
Journal
IEEE Journal of Biomedical and Health Informatics
Year
2016
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
2168-2194
Publisher
IEEE
Ty
JOUR
cite-key
Spatially constrained random walk approach for accurate estimation of airway wall surfaces (inproceedings)
Author
Xu, Ziyue and Bagci, Ulas and Foster, Brent and Mansoor, Awais and Mollura, Daniel J
Year
2013
Pages
559--566
Publisher
Springer Berlin Heidelberg
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
International Conference on Medical Image Computing and Computer-Assisted Intervention
Ty
CONF
cite-key
Synergistic combination of clinical and imaging features predicts abnormal imaging patterns of pulmonary infections (article)
Author
Bagci, Ulas and Jaster-Miller, Kirsten and Olivier, Kenneth N and Yao, Jianhua and Mollura, Daniel J
Journal
Computers in Biology and Medicine
Year
2013
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Publisher
Pergamon
Ty
JOUR
cite-key
Talc Pleurodesis With Intense 18 F-FDG Activity But No 68 Ga-DOTA-TATE Activity on PET/CT (article)
Author
Papadakis, Georgios Z and Millo, Corina and Bagci, Ulas and Patronas, Nicholas J and Stratakis, Constantine A
Journal
Clinical Nuclear Medicine
Year
2015
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
The influence of intensity standardization on medical image registration (inproceedings)
Author
Bagci, Ulas and Udupa, Jayaram K and Bai, Li
Year
2010
Pages
76251X--76251X
Publisher
International Society for Optics and Photonics
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Journal
SPIE Medical Imaging
Ty
CONF
cite-key
The role of intensity standardization in medical image registration (article)
Author
Ba?c?, Ula? and Udupa, Jayaram K and Bai, Li
Journal
Pattern Recognition Letters
Year
2010
Volume
31
Number
4
Pages
315--323
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0167-8655
Publisher
North-Holland
Ty
JOUR
cite-key
The Use of Radiolabelled 18-F-2-Deoxy-2-Fluro-Glucose (18-FDG) in Combined Positron Emission Tomography-Computed Tomography (PET-CT) to Evaluate Infection: Lessons Learned from a Case Series of 23 Patients with Chronic Granulomatous Disease (CGD) (article)
Author
Spergel, Amanda K Rudman and Chen, Clara C and Beegle, Cheryl Ann and Littel, Patricia and Garofalo, Mary and Anaya-O'Brien, Sandra and Marquesen, Martha and Bagci, Ulas and Mollura, Daniel J and Gallin, John I
Journal
Journal of Allergy and Clinical Immunology
Year
2015
Volume
135
Number
2
Pages
AB98
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
0091-6749
Publisher
Elsevier Science Ltd.
Ty
JOUR
cite-key
TumorNet: Lung Nodule Characterization Using Multi-View Convolutional Neural Network with Gaussian Process (article)
Author
Hussein, Sarfaraz and Gillies, Robert and Cao, Kunlin and Song, Qi and Bagci, Ulas
Journal
arXiv preprint arXiv:1703.00645
Year
2017
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Ty
JOUR
cite-key
Value of F-18-NaF PET/CT imaging in the assessment of Gorham-Stout disease activity (inproceedings)
Author
Papadakis, GZ and Millo, C and Bagci, U and Patronas, NJ and Collins, MT
Year
2016
Volume
43
Pages
S597--S597
Publisher
SPRINGER 233 SPRING ST, NEW YORK, NY 10013 USA
Date-Added
2017-03-12 03:51:09 +0000
Date-Modified
2017-03-12 03:51:09 +0000
Isbn
1619-7070
Journal
EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING
Ty
CONF
Researchers at the University of Central Florida have developed an innovative capsule-based deep learning system that requires far less parameterization to perform object segmentation more accurately and efficiently than state-of-the-art convolutional neural networks (CNNs) such as U-Net. The UCF deep convolutional-deconvolutional capsule network called SegCaps also reduces the cost, time and memory space needed to automate the segmentation process.The system works with many computer vision applications, such as medical imaging, for effective cancer diagnosis.
In one example application, UCF researchers used the system's SegCaps network architecture to segment pathological lungs from low-dose CT scans. Experimental results showed that compared to the U-Net architecture, SegCaps reduced the number of parameters by 95.4 percent while still providing better segmentation accuracy. Also, the system aptly handled large image sizes (512 x 512 pixels) as well as baseline sizes (less than 32 x 32).
Technical Details
The invention comprises a novel multi-task deep convolutional-deconvolutional capsule architecture called SegCaps and methods for using the system for improved, accurate object segmentation. To dramatically reduce the memory and parameter burden of a capsule implementation, SegCaps acts locally when routing children capsules to parent capsules and also allows for the segmentation of large image sizes. It shares transformation matrices (sets of parameters for children capsules) across capsules within the same capsule type. All of the capsule storage occurs at the neuron level as vectors rather than scalars. Vectors contain information about spatial orientation, magnitude/prevalence, and other attributes of an extracted feature and represent the "capsule types" within a layer.
The system's object segmentation process starts when a computing device receives an input image and passes it through a convolutional layer to produce feature maps. The maps form a set of children capsules with associated sets of parameters to model the spatial relationships of objects. SegCaps uses the children capsules to create a set of prediction vectors that are locally constrained within eachof the parent capsules' kernels. The effort produces locally accurate predictions for components of the input image, thus forming meaningful part-to-whole relationships not found in standard CNNs.
Partnering Opportunity
The research team is looking for partners to develop the technology further for commercialization.
Stage of Development
Prototype available.
Researchers at the University of Central Florida and the Mayo Clinic have developed an automated system that enables radiologists to detect and assess the cancer risk of pancreatic cysts faster and more effectively than using conventional MRI technology and radiographic guidelines. The cysts, called intraductal papillary mucinous neoplasms (IPMNs), are radiographically identifiable precursors to pancreatic cancer. Consequently, the early detection and risk assessment of IPMNs is vital.
With conventional technology, a radiologist may have to read more than 1,000 images to evaluate a cyst for just one patient. The new system streamlines the process by using MRI data with machine learning strategies to improve tumor risk stratification (characterization). Also, the invention can enable non-invasive cancer staging and prognosis, and foster personalized treatment planning as a part of precision medicine.
Technical Details
The invention comprises a system and methods for automatically diagnosing IPMNs in a pancreas using multi-modal MRI data (TI and T2 images). In one example application, the system comprises an MRI scanner and a processor programmed to compute the minimum and maximum intensity projections that correspond to the Tl and T2 MRI scans of a patient's pancreas. The intensity projections then go into a pre-trained image recognition convolutional neural network (CNN) algorithm to obtain feature vectors. Next, canonical correlation analysis (CCA)-based feature fusion is performed to produce a final vector with discriminative and transformed feature representation. Finally, the system employs a support vector machine (SVM) classifier to determine whether the pancreas includes IPMNs.
Researchers at the University of Central Florida have developed a method for reducing the time and cost of inspecting civil structures like bridges and buildings. Conventional methods for visually assessing civil infrastructures use subjectivity and may require long inspection time and high labor costs. Although some technologies (such as robotic techniques, augmented reality, and mixed reality interfaces) can collect objective, quantified data, an inspector's expertise is still critical in many instances. Such technologies, however, are not designed to work interactively with a human inspector.
In contrast, the UCF Collective Intelligence Framework uniquely blends AI with mixed reality (MR) and can be integrated into an MR-supported see-through headset or a hand-held device. An inspector can analyze damage in real time and calculate or assess its condition without performing any manual measurements. At any step of the analysis/assessment, the inspector can intervene and correct the operations of the AI. Another advantage of the system is that the inspector can analyze defects in a remote location safely while reducing the need for access equipment. For example, if the defect location is hard to reach and poses a safety concern (like under a bridge or atop high-rise buildings), the headset can zoom in and still perform an assessment without needing equipment like a ladder. Consequently, the methods can reduce inspection time and labor costs while ensuring a quantified, reliable, and objective infrastructure evaluation with human-verified results. The methodology is expandable for many types of structures.
Technical Details
The UCF invention integrates unique AI detection and segmentation algorithms into an MR framework that performs automatic detection and segmentation of defect regions using real-time deep learning operations. In infrastructure assessment, creating a large image dataset for machine learning is essential but can be challenging. As a solution, the invention offers an advanced data augmentation technique that enables the framework to generate a synthetically sufficient number of images (like cracks and spalls) from available image data.
In an example application, an inspector assesses a concrete pier using an MR headset integrated with the framework. While the inspector performs routine tasks, the AI system in the headset continuously guides the inspector and shows possible defects in real time. Once the inspector confirms a defect location, the AI system starts analyzing it by first executing defect segmentation, then characterization to determine the specific type of defect. If the defect boundaries need corrections or the segmentation requires fine-tuning, the inspector can make the necessary adjustments. The system uses the alterations made by the inspector to retrain the AI model so that the AI's accuracy improves over time.
Partnering Opportunity
The research team is looking for partners to develop the technology further for commercialization.
Stage of Development
Prototype available.
