Research Terms
(2020) Parvathaneni RK, Bertolini E, Shamimuzzaman M, Vera DL, Lung P-Y, Rice BR, Zhang J, Brown PJ, Lipka AE, Bass HW, and Eveland AL. "The regulatory landscape of early maize inflorescence development." Genome Biology 2020 Jul 6;21(1):165.
doi: 10.1186/s13059-020-02070-8. PMID: 32631399.
(2020) Easterling KA, Pitra NJ, Morcol TB, Aquino JR, Lopes LG, Bussey KC, Matthews PD, and Bass HW. "Identification of Tandem Repeat Families from Long-Read Sequences of Humulus lupulus"
PLoS ONE 15(6): e0233971 (DOI: 10.1371/journal.pone.0233971). [PubMed 32502183].
(2020) Wheeler E, Brooks AM, Concia L, Vera DL, Wear EE, LeBlanc C, Ramu U, Vaughn MW, Bass HW, Martienssen RA, Thompson WF, and Hanley-Bowdoin L. "Arabidopsis DNA replication initiates in intergenic, AT-rich open chromatin" Plant Physiology 183:206-220.
(DOI: 10.1104/pp.19.01520). [PubMed 32205451].
(2019) Dumur T, Duncan S, Graumann K, Desset S, Randall RS, Mittelsten Scheid O, Bass HW, Prodanov D, Tatout C, and Baroux C. "Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions." Nucleus 10(1):181-212.
(DOI: 10.1080/19491034.2019.1644592) [PubMed # | ONLINE ].
(2019) Gumber HW, McKenna JF, Tolmie AF, Jalovec AM, Kartick AC, Graumann K, and Bass HW. "MLKS2 is an ARM domain and F-actin-associated KASH protein that functions in stomatal complex development and meiotic chromosome segregation." Nucleus 10(1):144-166. (DOI: 10.1080/19491034.2019.1629795) [PubMed # | ONLINE | PDF+ ].
(2019) Gumber HK, McKenna JF, Estrada AL, Tolmie AF, Graumann K, and Bass HW. "Identification and characterization of genes encoding the nuclear envelope LINC complex in the monocot species Zea mays" Journal of Cell Science 132(3):jcs221390. (doi: 10.1242/jcs.221390) [ PDF+ ]. With associated feature article: First Person - Hardeep Gumber. Journal of Cell Science 132(3):jcs221390. (DOI: 10.1242/jcs.230219)
(2018) Easterling KA, Pitra NJ, Jones RJ, Lopes LG, Aquino JR, Zhang D, Matthews PD, and Bass HW. "3D Molecular Cytology of Hop (Humulus lupulus) Meiotic Chromosomes Reveals Non-disomic Pairing and Segregation, Aneuploidy, and Genomic Structural Variation" Frontiers in Plant Science 9:1501(13pp) (doi /10.3389/fpls.2018.01501). Article included in Ebook (PDF or EPUB): (2019) Advances in Plant Meiosis: From Model Species to Crops.
(2018) Turpin ZM, Vera DL, Savadel SD, Lung, P-Y, Wear EE, Mickelson-Young L, Thompson, WF, Hanley-Bowdoin L, Dennis, JH, Zhang J, and Bass HW. "Chromatin Structure Profile Data from DNS-seq: Differential Nuclease Sensitivity Mapping of Four Reference Tissues of B73 Maize (Zea mays L)." Data in Brief 20:358-363 (DOI: 10.1016/j.dib.2018.08.015).
(2018) Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Ruth Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan J-C, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, Kollner T, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, Donald R. McCarty DR, Noshay J, Portwood II JL, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xion W, and Brutnell TP. "The maize W22 genome provides a foundation for functional genomics and transposon biology" Nature Genetics 50:1282-1288 (DOI: 10.1038/s41588-018-0158-0). [PubMed 30061736].
(2018) Girimurugan SB, Liu Y, Lung P-Y, Vera DL, Dennis JH, Bass HW, and Zhang J. "iSeg: an efficient algorithm for segmentation of genomic and epigenomic data." BMC Bioinformatics 19:131(15pp) (DOI: 10.1186/s12859-018-2140-3). [PubMed 29642840].
(2018) Griffin BD and Bass HW. "Review: Plant G-quadruplex (G4) motifs in DNA and RNA; abundant, intriguing sequences of unknown function." Plant Science 269:143-147. (DOI: 10.1016/j.plantsci.2018.01.011 [PDF via DiginNole!).
(2017) Zhang* D, Easterling* KA, Pitra* NJ, Coles MC, Buckler ES, Bass HW, and Matthews PD. "Non-Mendelian SNP inheritance and atypical meiotic configurations are prevalent in hop (Humulus lupulus L.)" The Plant Genome 10(3):(14 pp). (DOI: 10.3835/plantgenome2017.04.0032) [PDF].
(2017) Savadel SD and Bass HW. "Review: Take a Look at Plant DNA Replication: Recent Insights and New Questions." Plant Signaling & Behavior, 12:4, e1311437 (DOI: 10.1080/15592324.2017.1311437).
Public images on omero at bio for teaching and research; https://goo.gl/CTI06F view as Public omero
(2017) Zhang* D, Easterling* KA, Pitra* NJ, Coles MC, Buckler ES, Bass HW, and Matthews PD. "Non-Mendelian SNP inheritance and atypical meiotic configurations are prevalent in hop (Humulus lupulusL.)" The Plant Genome (in press, PDF avail on First Look page, or here without 1000 pg supp.).
Differential Nuclease Sensitivity Mapping of Maize Chromatin; Seminar; Interdepartmental Program in Plant Molecular and Cell Biology (PMCB); University of Florida, Gainesville, FL; 2015