Research Terms
Life Sciences Biochemistry Proteins Biology Structural Biology
Keywords
G4 Dna Nucleoside Diphosphate Kinase Siroheme Biogenesis Small Ribsosome Subunit Biogenesis Sulfite Reductase
1: Johnson MC, Tatum KB, Lynn JS, Brewer TE, Lu S, Washburn BK, Stroupe ME, Jones
KM. Sinorhizobium meliloti Phage ΦM9 Defines a New Group of T4 Superfamily Phages
with Unusual Genomic Features but a Common T=16 Capsid. J Virol. 2015
Nov;89(21):10945-58. doi: 10.1128/JVI.01353-15. Epub 2015 Aug 26. PubMed PMID:
26311868; PubMed Central PMCID: PMC4621102.
2: Brewer TE, Stroupe ME, Jones KM. The genome, proteome and phylogenetic
analysis of Sinorhizobium meliloti phage ΦM12, the founder of a new group of
T4-superfamily phages. Virology. 2014 Feb;450-451:84-97. doi:
10.1016/j.virol.2013.11.027. Epub 2013 Dec 25. PubMed PMID: 24503070.
3: Stroupe ME, Brewer TE, Sousa DR, Jones KM. The structure of Sinorhizobium
meliloti phage ΦM12, which has a novel T=19l triangulation number and is the
founder of a new group of T4-superfamily phages. Virology. 2014
Feb;450-451:205-12. doi: 10.1016/j.virol.2013.11.019. Epub 2014 Jan 6. PubMed
PMID: 24503083.
4: Sousa DR, Stagg SM, Stroupe ME. Cryo-EM structures of the actin:tropomyosin
filament reveal the mechanism for the transition from C- to M-state. J Mol Biol.
2013 Nov 15;425(22):4544-55. doi: 10.1016/j.jmb.2013.08.020. Epub 2013 Sep 8.
PubMed PMID: 24021812; PubMed Central PMCID: PMC3845445.
5: Sachse C, Chen JZ, Coureux PD, Stroupe ME, Fändrich M, Grigorieff N.
High-resolution electron microscopy of helical specimens: a fresh look at tobacco
mosaic virus. J Mol Biol. 2007 Aug 17;371(3):812-35. Epub 2007 Jun 4. PubMed
PMID: 17585939; PubMed Central PMCID: PMC2025690.
6: Stroupe ME, Tange TØ, Thomas DR, Moore MJ, Grigorieff N. The three-dimensional
arcitecture of the EJC core. J Mol Biol. 2006 Jul 21;360(4):743-9. Epub 2006 Jun
5. PubMed PMID: 16797590.
7: Stroupe ME, Xu C, Goode BL, Grigorieff N. Actin filament labels for localizing
protein components in large complexes viewed by electron microscopy. RNA. 2009
Feb;15(2):244-8. doi: 10.1261/rna.1313609. Epub 2008 Dec 17. PubMed PMID:
19095618; PubMed Central PMCID: PMC2648703.
8: Shibuya T, Tange TØ, Stroupe ME, Moore MJ. Mutational analysis of human
eIF4AIII identifies regions necessary for exon junction complex formation and
nonsense-mediated mRNA decay. RNA. 2006 Mar;12(3):360-74. PubMed PMID: 16495234;
PubMed Central PMCID: PMC1383576.
9: Ghalei H, Schaub FX, Doherty JR, Noguchi Y, Roush WR, Cleveland JL, Stroupe
ME, Karbstein K. Hrr25/CK1δ-directed release of Ltv1 from pre-40S ribosomes is
necessary for ribosome assembly and cell growth. J Cell Biol. 2015 Mar
16;208(6):745-59. doi: 10.1083/jcb.201409056. PubMed PMID: 25778921; PubMed
Central PMCID: PMC4362465.
10: Askenasy I, Pennington JM, Tao Y, Marshall AG, Young NL, Shang W, Stroupe ME.
The N-terminal Domain of Escherichia coli Assimilatory NADPH-Sulfite Reductase
Hemoprotein Is an Oligomerization Domain That Mediates Holoenzyme Assembly. J
Biol Chem. 2015 Jul 31;290(31):19319-33. doi: 10.1074/jbc.M115.662379. Epub 2015
Jun 18. PubMed PMID: 26088143; PubMed Central PMCID: PMC4521050.
11: Smith KW, Stroupe ME. Mutational analysis of sulfite reductase hemoprotein
reveals the mechanism for coordinated electron and proton transfer. Biochemistry.
2012 Dec 11;51(49):9857-68. doi: 10.1021/bi300947a. Epub 2012 Nov 29. PubMed
PMID: 23153334.
12: Kopylov M, Bass HW, Stroupe ME. The maize (Zea mays L.) nucleoside
diphosphate kinase1 (ZmNDPK1) gene encodes a human NM23-H2 homologue that binds
and stabilizes G-quadruplex DNA. Biochemistry. 2015 Mar 10;54(9):1743-57. doi:
10.1021/bi501284g. Epub 2015 Feb 24. PubMed PMID: 25679041.
13: Hearn AS, Stroupe ME, Cabelli DE, Ramilo CA, Luba JP, Tainer JA, Nick HS,
Silverman DN. Catalytic and structural effects of amino acid substitution at
histidine 30 in human manganese superoxide dismutase: insertion of valine C gamma
into the substrate access channel. Biochemistry. 2003 Mar 18;42(10):2781-9.
PubMed PMID: 12627943.
14: Greenleaf WB, Perry JJ, Hearn AS, Cabelli DE, Lepock JR, Stroupe ME, Tainer
JA, Nick HS, Silverman DN. Role of hydrogen bonding in the active site of human
manganese superoxide dismutase. Biochemistry. 2004 Jun 8;43(22):7038-45. PubMed
PMID: 15170341.
15: Lévêque VJ, Stroupe ME, Lepock JR, Cabelli DE, Tainer JA, Nick HS, Silverman
DN. Multiple replacements of glutamine 143 in human manganese superoxide
dismutase: effects on structure, stability, and catalysis. Biochemistry. 2000 Jun
20;39(24):7131-7. PubMed PMID: 10852710.
16: Hearn AS, Stroupe ME, Cabelli DE, Lepock JR, Tainer JA, Nick HS, Silverman
DN. Kinetic analysis of product inhibition in human manganese superoxide
dismutase. Biochemistry. 2001 Oct 9;40(40):12051-8. PubMed PMID: 11580280.
17: Andorf CM, Kopylov M, Dobbs D, Koch KE, Stroupe ME, Lawrence CJ, Bass HW.
G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at
specific locations in thousands of genes coupled to energy status, hypoxia, low
sugar, and nutrient deprivation. J Genet Genomics. 2014 Dec 20;41(12):627-47.
doi: 10.1016/j.jgg.2014.10.004. Epub 2014 Nov 4. PubMed PMID: 25527104.
18: Stroupe ME, Leech HK, Daniels DS, Warren MJ, Getzoff ED. CysG structure
reveals tetrapyrrole-binding features and novel regulation of siroheme
biosynthesis. Nat Struct Biol. 2003 Dec;10(12):1064-73. Epub 2003 Nov 2. PubMed
PMID: 14595395.
