Carlos Vallejos

Kilasi NK, J Singh, CE Vallejos, C Ye, K Jagadish, P Kusolwa, B Rathinasabapathi. 2018. Heat stress tolerance in rice (Oryza sativa L.): Identification of quantitative trait loci and candidate genes for seedling growth under heat stress. Frontiers in Plant Science 9, 1578. https://doi.org/10.3389/fpls.2018.01578

 

Wallach D, C Hwang, MJ Correll, JW Jones, KJ Boote, G Hoogenboom, SA Gezan, M Bhakta, CE Vallejos. 2018. A dynamic model with QTL covariables for predicting flowering time of common bean (Phaseolus vulgaris) genotypes. 2018. European Journal of Agronomy 101, 200-209. https://doi.org/10.1016/j.eja.2018.10.003

 

Wei K, J Wang, M Sang, S Zhang, H Zhou, J Clavijo, CE Vallejos, R Wu. 2018. An ecophysiologically based mapping model identifies a major pleiotropic QTL for leaf growth trajectories of Phaseolus vulgaris. New Phytologist 95,775-784. https://doi/abs/10.1111/tpj.13986

Ramírez?Sánchez M, DJ Huber, CE Vallejos. 2018. Comparison of tissue deterioration of ripening banana fruit (Musa spp., AAA group, Cavendish subgroup) under chilling and non?chilling temperatures. Journal of the Science of Food and Agriculture 98, 4644-4652. https://doi.org/10.1002/jsfa.8994

 

Singh J, Zhao JX, CE Vallejos. 2018. Differential transcriptome patterns associated with early seedling development in a wild and a domesticated common bean (Phaseolus vulgaris L.) accession. Plant Science 274, 153-162. https://doi.org/10.1016/j.plantsci.2018.05.024

 

Ramirez-Sanchez M, DJ Huber, CE Vallejos, K Kelley. 2018. Physiological, molecular and ultrastructural analyses during ripening and over-ripening of banana (Musa spp., AAA group, Cavendish sub-group) fruit suggest characteristics of programmed cell death. Journal of the Science of Food and Agriculture 98, 609-617. https://doi.org/10.1002/jsfa.8505

 

Bhakta MS, SA Gezan, JA Clavijo Michelangeli, M Carvalho, L Zhang, JW Jones, KJ Boote, MJ. Correll, J Beaver, JM Osorno, R Colbert, I Rao, S Beebe, A Gonzalez, J Ricaurte, CE Vallejos. 2017. A predictive model for time-to-flower in the common bean based on QTL and environmental variables. G3 7, 3901-3912. https://doi.org/10.1534/g3.117.300229.

 

Acharya S, M Correll, JW Jones, KJ Boote, PD Alderman, Z Hu, CE Vallejos. 2017. Reliability of genotype-specific parameter estimation for crop models: insights from a sequential estimation approach. T ASABE 60, 1699-1712. https://doi:10.13031/trans.12183.

 

Hwang C, MJ Correll, SA Gezan, L Zhang, MS Bhakta, CE Vallejos, KJ Boote, JA Clavijo- Michelangeli, JW Jones. 2017. Next generation crop models: A modular approach to model early vegetative and reproductive development of the common bean (Phaseolus vulgaris L). Agr. Syst. 155, 225-239.  http://dx.doi.org/10.1016/j.agsy.2016.10.010

 

Zhang L, SA. Gezan, CE Vallejos, JW Jones, KJ Boote, JA Clavijo Michelangeli, M Bhakta, JM Osorno, I Rao, S Beebe, E Roman-Paoli, A Gonzalez, J Beaver, J Ricaurte, R Colbert, MJ Correll. 2017. Development of a QTL-environment-based predictive model for node addition rate in common bean. Theor. Appl. Genet. 130, 1065-1079. DOI:10.1007/s00122-017-2871-y

 

Singh J, JA Clavijo-Michelangeli, SA Gezan, H Lee, CE Vallejos. 2017. Maternal effects on seed and seedling phenotypes in reciprocal F1 hybrids of the common bean (Phaseolus vulgaris L.). Front. Plant Sci. 8:42. doi: 10.3389/fpls.2017.00042

 

Iwata-Otsubo A, B Radke, S Findley, B Abernathy, CE Vallejos, SA Jackson. 2016. Fluorescence in situ hybridization (FISH)-based karyotyping reveals rapid evolution of centromeric and subtelomeric repeats in common bean (Phaseolus vulgaris) and relatives. G3-Genes Genomes Genetics 6, 1013-1022. doi: 10.1534/g3.115.024984

 

Boote KJ, CE Vallejos, JW Jones, MJ Correll. 2015. Crop Modeling Approaches for Predicting Phenotype of Grain Legumes with Linkage to Genetic Information. In: Crop Systems Biology – Narrowing the Gaps between Crop Modeling and Genetics. Eds. X Yin, P Struik. Springer International Publishing AG. The Netherlands. Pp. 163-192.

 

Jiang L, JA Clavijo, L Sun, X Zhu, MS Bhakta, SA Gezan, M Carvalho, CE Vallejos, R Wu. 2015. Plastic expression of heterochrony quantitative trait loci (hQTL) for leaf growth in the common bean (Phaseolus vulgaris L.). New Phytologist 207, 872-882. http://onlinelibrary.wiley.com/doi/10.1111/nph.13386/full

 

Bhakta M, V Jones, CE Vallejos. 2015. Punctuated distribution of recombination hotspots and demarcation of pericentromeric regions revealed by a high resolution linkage map of Phaseolus vulgaris L. PLoS ONE 10, e0116822. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0116822

Lee J-S^g, BM Hurr, DJ. Huber, CE Vallejos. 2015. Characterization of nucleases associated with ethylene-induced programmed cell death in immature cucumber fruit. Postharvest Biol. Tech. (Accepted 2/23/2015, In press).

Jiang L^g, JA Clavijo^g, L Sun, X Zhu, MS Bhakta^g, SA Gezan, M Carvalho^p, CE Vallejos, R Wu. 2015. Plastic expression of heterochrony quantitative trait loci (hQTL) for leaf growth in the common bean (Phaseolus vulgaris L.). New Phytol. DOI: 10.1111/nph.13386. http://onlinelibrary.wiley.com/doi/10.1111/nph.13386/full

Bo WH^g, GF Fu, Z Wang, F Xu, Y Shen, J Xu, CE Vallejos, RL Wu. 2014. Systems mapping: How to map genes for biomass allocation towards an ideotype. Brief. Bioinform. 15, 660-669. http://bib.oxfordjournals.org/content/15/4/660.full.pdf+html.

Wang Z^g, Y Wang, NT Wang,  JX Wang, ZH Wang, CE Vallejos, RL Wu. 2014. Towards a comprehensive picture of the genetic landscape of complex traits. Brief Bioinform 15, 30-42. http://bib.oxfordjournals.org/content/15/1/30.full.

Clavijo-Michelangeli JC^g, M Bhakta^g, SA Gezan, KJ Boote, CE Vallejos. 2013. From flower to seed: Identifying phenological markers and reliable growth functions to model reproductive development in the common bean (Phaseolus vulgaris L.). Plant Cell Environ. 36, 2046-2058.

Hurr BM, DJ Huber, CE Vallejos, E Lee^g, SA Sargent. 2013. Ethylene-induced overproduction of reactive oxygen species is responsible for the development of watersoaking in immature cucumber fruit. J Plant Phys. 170, 56-62. Impact Factor: 2.699

Wu RL, JG Cao, ZW Huang, ZW Huang, Z Wang, Gai, JY Gai, CE Vallejos. 2011.  Systems mapping: how to improve the genetic mapping of complex traits through design principles of biological systems. BMC Systems Biology 5, 84. http://www.biomedcentral.com/1752-0509/5/84. Impact Factor: 2.85.

Hurr BM, DJ Huber, CE Vallejos.  2010.  Features of programmed cell death precede watersoaking development in ethylene-treated immature cucumber fruit. Postharvest Biol. Tech. 58, 13-20.

Vallejos CE, V Jones, RE Stall, JB Jones, GV Minsavage, DC Schultz, R Rodrigues, LE. Olsen, M Mazourek.  2010.  Characterization of two recessive genes controlling resistance to all races of bacterial spot in peppers.  Theor. Appl. Genet. 121, 37-46.

He Q^g, A Berg, Y Li, CE Vallejos, R Wu.  2010.  Mapping genes for plant structure, development and evolution: functional mapping meets ontology.  Trends Genet. 26, 39-46.

Hurr BM, DJ Huber, CE Vallejos, ST Talcott.  2009.  Developmentally dependent responses of detached cucumber (Cucumis sativus L.) fruit to exogenous ethylene. Postharvest Biol. Tech.52, 207-215.

Schlueter JA^p, JL Goicoechea, K Collura, N Gill, J-Y Lin, Y Yu, D Kudrna, A Zuccolo, CE Vallejos, J Tohme, M Blair, P McClean, RA Wing, SA Jackson.  2008.  BAC-end sequence analysis and a draft physical map of the common bean (Phaseolus vulgaris L.) genome.  Trop. Plant Biol. 1, 40-48.

Vallejos CE, NS Sakiyama, V Jones, S. Shanker. 2007. Adaptation of a silica membrane-based kit for purification of sequencing-ready BAC DNA. Plant Mol. Biol. Reporter  25, 11-16.

Hannah MA, V Geffroy, J Kopka, MW Blair, A Erban, CE Vallejos, AG Heyer, FE Sanders, PA Millner, DJ Pilbeam. 2007.  Hybrid weakness controlled by the dosage-dependent lethal (DL) gene system in common bean (Phaseolus vulgaris) is caused by a shoot-derived inhibitory signal leading to salicylic acid-associated root death.  New Phytol.  176, 537-549.

Subakan O^g, B Jian, BC Vemuri, CE Vallejos.  2007.  Feature preserving image smoothing using a continuous mixture of tensors.  Proc. IEEE Int. Conf. Comput. Vis., 11: nihpa163297. doi:  10.1109/ICCV.2007.4408918.

Vallejos CE.  2007.  An Expedient and Versatile Protocol for Extracting High-Quality Plant DNA.  Cold Spring Harbor Protocols.  doi:10.1101/pdb.prot4765.  http://www.cshprotocols.org/ .

Messina CD^g, JW Jones, KJ Boote, CE Vallejos. 2006.  A gene-based model to simulate soybean development and yield responses to environment.  Crop Sci.  46, 456-466.

Vallejos CE, G Astua-Monge^p, V Jones, TR Plyler, NS Sakiyama, SA Mackenzie. 2006.  Genetic and molecular characterization of the I locus of Phaseolus vulgaris.  Genetics.  172, 1229-1242.

Hacisalihoglu G^g, JJ Hart, CE Vallejos, LV Kochian.  2004.  The role of shoot-localized processes in the mechanism of Zn efficiency in common bean.  Planta 218, 704-711.

Lal SK^p, MJ Giroux, V Brendel, CE Vallejos, LC Hannah. 2003. The maize genome contains a Helitron insertion. Plant Cell 15, 381-391.

Pedrosa A^g, CE Vallejos, A Bachmair, D Schweizer.  2003.  Integration of common bean (Phaseolus vulgaris) linkage and chromosomal maps.  Theor. Appl. Genet. 106, 205-212.

Murray J^g, J Larsen^g, TE Michaels, A Schaafsma, CE Vallejos, KP Pauls.  2002.   Identification of putative genes in bean (Phaseolus vulgaris) genomic (Bng) RFLP clones and their conversion to STSs.  Genome 45, 1013-1024.

Astua-Monge G^p, A Lyznik, V Jones, SA Mackenzie, CE Vallejos. 2002. Evidence for a prokaryotic insertion-sequence contamination in eukaryotic sequences registered in different databases.  Theor. Appl. Genet. 104, 48-53.

Lee JM^g, D Grant, CE Vallejos, RC Shoemaker. 2001. Genome organization in dicots. II. Arabidopsis as a 'bridging species' to resolve genome evolution events among legumes. Theor. Appl. Genet. 103,   765-773.

Vallad G^g, M Rivkin, CE Vallejos, P McClean. 2001. Cloning and homology modelling of a Pto-like protein kinase family of common bean (Phaseolus vulgaris L.). Theor. Appl. Genet. 1031046-1058.

Astua-Monge G^g, GV Minsavage, RE Stall, CE Vallejos, MJ Davis, JB Jones. 2000. Xv4-vrxv4: A new gene-for-gene interaction identified between Xanthomonas campestris pv. vesicatoria race T3 and the wild tomato relative Lycopersicon pennellii. Mol. Plant Microbe In. 13, 1346-1355.

Vallejos CE, JJ Malandro, K Sheehy, MJ Zimmermann.  2000. Detection and cloning of expressed sequences linked to a target gene. Theor. Appl. Genet. 101, 1109-1113.

Plyler TR, CE Vallejos. 2000. Method for cloning restriction fragments containing the termini of BAC Inserts. BioTechniques 28, 1012-1018.

Rivkin MI^g, CE Vallejos, PE McClean. 1999. Disease-resistance related sequences in common bean. Genome 42, 41-47.

Jones JW, A Kenig, CE Vallejos. 1999. Reduced state-variable tomato growth model. T ASAE, 42, 255-265.

Freyre R^g, PW Skroch^g, V Geffroy, AF Adam-Blondon, A Shirmohamadali, WC Johnson, V Llaca, RO Nodari, PA Pereira,  S-M Tsai, J Tohme, M Dron, J Nienhuis, CE Vallejos, P Gepts. 1998. Towards an integrated linkage map of common bean. 4. Development of a core linkage map and alignment of RFLP maps. Theor. Appl. Genet. 97, 847-856.

Sarria R^g, A Lyznik, CE Vallejos, SA Mackenzie. 1998. A cytoplasmic male sterility–associated mitochondrial peptide in common bean is post-translationally regulated. Plant Cell 10, 1217-1228.

Yu ZH^p, RE Stall, CE Vallejos.  1998. Detection of genes for resistance to common bacterial blight of beans. Crop Sci. 38, 1290-1296.

Boutin SR, ND Young, TC Olson, ZH Yu, CE Vallejos, RC Shoemaker. 1995. Genome conservation among three legume genera detected with DNA markers. Genome 38, 928-937.

Yu ZH, JF Wang, RE Stall, CE Vallejos. 1995. Genomic localization of tomato genes that control a hypersensitive reaction to Xanthomonas campestris pv. vesicatoria (Doidge) Dye. Genetics 141, 675-682.

He S^g, ZH Yu, CE Vallejos, SA Mackenzie. 1995.  Pollen fertility restoration by nuclear gene Fr in CMS common bean: an Fr linkage map and the mode of Fr action. Theor. Appl. Genet. 90, 1056-1062. 

Wang JF^g, RE Stall, CE Vallejos.  1994. Genetic analysis of a complex hypersensitive reaction to bacterial spot in tomato. Phytopathology 84, 126-132.

Vallejos CE, NS Sakiyama, CD Chase. 1992 A molecular marker-based linkage map of Phaseolus vulgaris L. Genetics 131, 733-740.

Bournival BL^g. CE Vallejos.  1991.  New sources of genetic resistance to race 3 of Fusarium wilt of tomato.  Plant Disease 75, 281-284.

Chase CD, V M. Ortega, CE Vallejos.  1991.  DNA restriction fragment length polymorphisms parallel isozyme diversity in Phaseolus vulgaris L.  Theor. Appl. Genet.  81, 806-811.

Vallejos CE, CD Chase. 1991. An extended linkage map for the phaseolin linkage group of Phaseolus vulgaris L.  Theor. Appl. Genet. 82, 353-357.

Vallejos CE, CD Chase. 1991. Linkage between isozyme markers and a locus affecting seed size in Phaseolus vulgaris L.  Theor. Appl. Genet. 81, 413-419.

Vallejos CE.  1991.  Low night temperatures have a differential effect on the diurnal cycling of gene expression in cold sensitive and tolerant tomatoes.  Plant Cell Environ. 14, 105-112.

Bournival BL^g, CE Vallejos, JW Scott. 1990. Genetic analysis of resistances to races 1 and 2 of Fusarium oxysporum f. sp. lycopersici in tomato from the wild tomato Lycopersicon pennellii.  Theor. Appl. Genet. 79, 641-645.

Bournival BL^g, JW Scott, CE Vallejos. 1989.  An isozyme marker for resistance to race 3 of Fusarium oxysporum f. sp. lycopersici in tomato. Theor. Appl. Genet. 78, 489-494.

Vallejos CE, RW Pearcy. 1987.  Differential low temperature acclimation capacity of two species of Lycopersicon.  Can. J. Bot. 65, 1303-1307.

Vallejos CE, SD Tanksley, R Bernatzky.  1985.  Localization in the tomato genome of DNA restriction fragments containing sequences homologous to the rRNA (45s), the major chlorophyll a/b binding polypeptide and the ribulose bisphosphate carboxylase genes.  Genetics 112, 93-105.

Tanksley SD, CM Rick, CE Vallejos. 1984. Tight linkage between a nuclear male-sterile locus and an enzyme marker in tomato: Potential application in breeding.  Theor. Appl. Genet. 68, 109-114.

Vallejos CE, SD Tanksley. 1983.  Segregation of low temperature tolerance and isozymes in an interspecific backcross of tomato.  Theor. Appl. Genet. 66, 241-247.

Vallejos CE, JM Lyons, RW Breidenbach, M Miller. 1983.  Characterization of a differential low temperature growth response in two species of Lycopersicon: The plastochron as a tool.  Planta 159, 487-496.